Pairwise fitting emdb-1770 on pdb-5uz4 by gmfit










Pairwise fitting of target emdb-1770 on reference pdb-5uz4 by gmfit(PID:4056457).





RANK[1] Corr.Coeff:0.887

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1770)

display:



color:



30S-002mRNA (after classification) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1770)]







REFERENCE(pdb-5uz4)

display:



color:


b'THE CRYO-EM STRUCTURE OF YJEQ BOUND TO THE 30S SUBUNIT SUGGESTS A     ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.887
0.721
0.659
0.635
0.618
0.614
0.607
0.603
0.591
0.509







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5uz4"(PDB-format) or 
 "5uz4"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1770.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.747567,-0.597100,-0.290886 159.866474 center 0,0,0 model #1
move 158.575430,160.309677,160.733213 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!