Pairwise fitting emdb-1770 on pdb-5no3 by gmfit










Pairwise fitting of target emdb-1770 on reference pdb-5no3 by gmfit(PID:8740).





RANK[1] Corr.Coeff:0.868

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1770)

display:



color:



30S-002mRNA (after classification) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1770)]







REFERENCE(pdb-5no3)

display:



color:


b'RSGA-GDPNP BOUND TO THE 30S RIBOSOMAL SUBUNIT (RSGA ASSEMBLY          ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.868
0.710
0.632
0.601
0.601
0.598
0.590
0.567
0.539
0.493







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5no3"(PDB-format) or 
 "5no3"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1770.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.671638,0.491560,0.554320 176.073321 center 0,0,0 model #1
move 178.553019,179.511687,180.143858 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5no3)]

[Download the target GMM(emdb 1770)]

[Download gmfit result file(8740)]