Pairwise fitting emdb-1770 on pdb-5no2 by gmfit



Pairwise fitting of target emdb-1770 on reference pdb-5no2 by gmfit(PID:1124473).

RANK[1] Corr.Coeff:0.860 [JSmol] [Molmil]
TARGET(emdb-1770)
display:
color:
30S-002mRNA (after classification) [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1770)]
REFERENCE(pdb-5no2)
display:
color:
b'RSGA-GDPNP BOUND TO THE 30S RIBOSOMAL SUBUNIT (RSGA ASSEMBLY ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.860 0.717 0.604 0.604 0.602 0.598 0.597 0.594 0.538 0.509

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5no2"(PDB-format) or "5no2"(mmCIF-format), and read it.
  2. Download the Target map "emd_1770.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.679382,0.488462,0.547580 175.671337 center 0,0,0 model #1
    move 177.081218,179.732992,180.966484 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!