Pairwise fitting emdb-1770 on pdb-5lmq by gmfit










Pairwise fitting of target emdb-1770 on reference pdb-5lmq by gmfit(PID:2791240).





RANK[1] Corr.Coeff:0.840

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1770)

display:



color:



30S-002mRNA (after classification) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1770)]







REFERENCE(pdb-5lmq)

display:



color:


b'STRUCTURE OF BACTERIAL 30S-IF1-IF3-MRNA-TRNA TRANSLATION PRE-         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.840
0.728
0.644
0.643
0.642
0.641
0.640
0.628
0.538
0.525







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5lmq"(PDB-format) or 
 "5lmq"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1770.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.069388,-0.326566,0.942624 164.691443 center 0,0,0 model #1
move 171.466743,171.829614,171.072637 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!