Pairwise fitting emdb-1770 on pdb-5lmp by gmfit










Pairwise fitting of target emdb-1770 on reference pdb-5lmp by gmfit(PID:4157966).





RANK[1] Corr.Coeff:0.864

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1770)

display:



color:



30S-002mRNA (after classification) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1770)]







REFERENCE(pdb-5lmp)

display:



color:


b'STRUCTURE OF BACTERIAL 30S-IF1-IF3-MRNA TRANSLATION PRE-INITIATION    ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.864
0.728
0.680
0.634
0.630
0.628
0.625
0.588
0.573
0.515







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5lmp"(PDB-format) or 
 "5lmp"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1770.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.061354,-0.319569,0.945575 165.353664 center 0,0,0 model #1
move 169.989989,172.454252,171.353610 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!