Pairwise fitting emdb-1737 on pdb-5n5z by gmfit



Pairwise fitting of target emdb-1737 on reference pdb-5n5z by gmfit(PID:1676638).

RANK[1] Corr.Coeff:0.591 [JSmol] [Molmil]
TARGET(emdb-1737)
display:
color:
Pyruvate carboxylase from S. aureus after addition of acetyl-CoA, AMP-PNP, KHCO3 and pyruvate [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1737)]
REFERENCE(pdb-5n5z)
display:
color:
b'CRYO-EM STRUCTURE OF RNA POLYMERASE I IN COMPLEX WITH RRN3 AND CORE ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.591 0.560 0.560 0.540 0.532 0.532 0.518 0.518 0.495 0.484

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5n5z"(PDB-format) or "5n5z"(mmCIF-format), and read it.
  2. Download the Target map "emd_1737.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.581943,0.588208,0.561564 127.689932 center 0,0,0 model #1
    move 358.115694,26.041607,321.142619 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!