Pairwise fitting emdb-1737 on pdb-5n5y by gmfit










Pairwise fitting of target emdb-1737 on reference pdb-5n5y by gmfit(PID:1341643).





RANK[1] Corr.Coeff:0.590

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1737)

display:



color:



Pyruvate carboxylase from S. aureus after addition of acetyl-CoA, AMP-PNP, KHCO3 and pyruvate [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1737)]







REFERENCE(pdb-5n5y)

display:



color:


b'CRYO-EM STRUCTURE OF RNA POLYMERASE I IN COMPLEX WITH RRN3 AND CORE   ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.590
0.560
0.517
0.517
0.516
0.508
0.505
0.490
0.490
0.484







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5n5y"(PDB-format) or 
 "5n5y"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1737.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.070209,0.680461,-0.729414 162.088930 center 0,0,0 model #1
move 256.550296,357.989276,345.264259 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!