Pairwise fitting emdb-1737 on pdb-3j70 by gmfit



Pairwise fitting of target emdb-1737 on reference pdb-3j70 by gmfit(PID:1342497).

RANK[1] Corr.Coeff:0.507 [JSmol] [Molmil]
TARGET(emdb-1737)
display:
color:
Pyruvate carboxylase from S. aureus after addition of acetyl-CoA, AMP-PNP, KHCO3 and pyruvate [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1737)]
REFERENCE(pdb-3j70)
display:
color:
b'MODEL OF GP120, INCLUDING VARIABLE REGIONS, IN COMPLEX WITH CD4 AND ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.507 0.429 0.428 0.423 0.418 0.413 0.413 0.407 0.352 0.352

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j70"(PDB-format) or "3j70"(mmCIF-format), and read it.
  2. Download the Target map "emd_1737.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.680062,-0.719433,0.141178 165.057704 center 0,0,0 model #1
    move 381.856807,410.986709,313.370184 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!