Pairwise fitting emdb-1718 on pdb-5np6 by gmfit










Pairwise fitting of target emdb-1718 on reference pdb-5np6 by gmfit(PID:3939344).





RANK[1] Corr.Coeff:0.874

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1718)

display:



color:



Ribosome dynamics and tRNA movement as visualized by time-resolved electron cryomicroscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1718)]







REFERENCE(pdb-5np6)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.874
0.723
0.703
0.699
0.695
0.694
0.656
0.655
0.649
0.645







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5np6"(PDB-format) or 
 "5np6"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1718.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.775084,0.185149,-0.604123 140.195165 center 0,0,0 model #1
move 162.875053,447.601451,325.855469 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!