Pairwise fitting emdb-1718 on pdb-5myj by gmfit










Pairwise fitting of target emdb-1718 on reference pdb-5myj by gmfit(PID:4031576).





RANK[1] Corr.Coeff:0.874

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1718)

display:



color:



Ribosome dynamics and tRNA movement as visualized by time-resolved electron cryomicroscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1718)]







REFERENCE(pdb-5myj)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.874
0.708
0.695
0.691
0.682
0.675
0.663
0.660
0.642
0.641







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5myj"(PDB-format) or 
 "5myj"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1718.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.419965,0.907282,-0.021650 159.680367 center 0,0,0 model #1
move 205.897267,228.395942,503.976416 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!