Pairwise fitting emdb-1717 on pdb-5nd9 by gmfit



Pairwise fitting of target emdb-1717 on reference pdb-5nd9 by gmfit(PID:4107844).

RANK[1] Corr.Coeff:0.861 [JSmol] [Molmil]
TARGET(emdb-1717)
display:
color:
Ribosome dynamics and tRNA movement as visualized by time-resolved electron cryomicroscopy [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1717)]
REFERENCE(pdb-5nd9)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.861 0.806 0.683 0.678 0.674 0.658 0.658 0.651 0.644 0.631

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5nd9"(PDB-format) or "5nd9"(mmCIF-format), and read it.
  2. Download the Target map "emd_1717.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.149230,0.936404,0.317613 112.895027 center 0,0,0 model #1
    move 96.700779,-101.750474,280.549221 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 5nd9)] [Download the target GMM(emdb 1717)] [Download gmfit result file(4107844)]