Pairwise fitting emdb-1717 on pdb-5nd9 by gmfit










Pairwise fitting of target emdb-1717 on reference pdb-5nd9 by gmfit(PID:4162136).





RANK[1] Corr.Coeff:0.861

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1717)

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color:



Ribosome dynamics and tRNA movement as visualized by time-resolved electron cryomicroscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1717)]







REFERENCE(pdb-5nd9)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.861
0.806
0.683
0.678
0.674
0.658
0.658
0.651
0.644
0.631







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5nd9"(PDB-format) or 
 "5nd9"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1717.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.149230,0.936404,0.317613 112.895027 center 0,0,0 model #1
move 96.700779,-101.750474,280.549221 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5nd9)]

[Download the target GMM(emdb 1717)]

[Download gmfit result file(4162136)]