Pairwise fitting emdb-1711 on pdb-6alf by gmfit










Pairwise fitting of target emdb-1711 on reference pdb-6alf by gmfit(PID:3955698).





RANK[1] Corr.Coeff:0.677

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1711)

display:



color:



Pyrococcus furiosus RNA Polymerase [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1711)]







REFERENCE(pdb-6alf)

display:



color:


b'CRYOEM STRUCTURE OF CROSSLINKED E.COLI RNA POLYMERASE ELONGATION      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.677
0.669
0.660
0.638
0.633
0.628
0.626
0.622
0.620
0.617







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "6alf"(PDB-format) or 
 "6alf"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1711.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.063959,-0.458743,0.886264 123.395488 center 0,0,0 model #1
move 162.863024,159.196414,168.063257 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!