Pairwise fitting emdb-1711 on pdb-5vc7 by gmfit










Pairwise fitting of target emdb-1711 on reference pdb-5vc7 by gmfit(PID:2214560).





RANK[1] Corr.Coeff:0.686

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1711)

display:



color:



Pyrococcus furiosus RNA Polymerase [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1711)]







REFERENCE(pdb-5vc7)

display:



color:


b'VCP LIKE ATPASE FROM T. ACIDOPHILUM (VAT) - CONFORMATION 1            ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.686
0.640
0.627
0.622
0.620
0.620
0.610
0.607
0.605
0.603







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5vc7"(PDB-format) or 
 "5vc7"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1711.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.523637,0.676484,0.517854 46.631378 center 0,0,0 model #1
move 183.662871,187.630323,187.855758 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!