Pairwise fitting emdb-1711 on pdb-5va1 by gmfit










Pairwise fitting of target emdb-1711 on reference pdb-5va1 by gmfit(PID:3815379).





RANK[1] Corr.Coeff:0.416

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1711)

display:



color:



Pyrococcus furiosus RNA Polymerase [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1711)]







REFERENCE(pdb-5va1)

display:



color:


b'CRYO-EM STRUCTURE OF THE HUMAN ETHER-A-GO-GO RELATED K+ CHANNEL       ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.416
0.414
0.411
0.387
0.368
0.354
0.345
0.344
0.340
0.330







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5va1"(PDB-format) or 
 "5va1"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1711.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.309447,0.916219,0.254530 122.271274 center 0,0,0 model #1
move 99.508350,60.178778,50.425157 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!