Pairwise fitting emdb-1711 on pdb-5upa by gmfit










Pairwise fitting of target emdb-1711 on reference pdb-5upa by gmfit(PID:4097445).





RANK[1] Corr.Coeff:0.682

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1711)

display:



color:



Pyrococcus furiosus RNA Polymerase [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1711)]







REFERENCE(pdb-5upa)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.682
0.644
0.636
0.634
0.634
0.632
0.627
0.623
0.620
0.620







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5upa"(PDB-format) or 
 "5upa"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1711.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.028494,-0.394534,0.918440 124.545777 center 0,0,0 model #1
move 161.844808,159.480950,168.363319 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!