Pairwise fitting emdb-1711 on pdb-5m3l by gmfit










Pairwise fitting of target emdb-1711 on reference pdb-5m3l by gmfit(PID:4010124).





RANK[1] Corr.Coeff:0.687

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1711)

display:



color:



Pyrococcus furiosus RNA Polymerase [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1711)]







REFERENCE(pdb-5m3l)

display:



color:


b'SINGLE-PARTICLE CRYO-EM USING ALIGNMENT BY CLASSIFICATION (ABC): THE  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.687
0.658
0.640
0.634
0.628
0.623
0.621
0.618
0.616
0.607







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5m3l"(PDB-format) or 
 "5m3l"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1711.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.195892,0.387274,-0.900914 129.860456 center 0,0,0 model #1
move 10.157883,86.101158,47.188990 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!