Pairwise fitting emdb-1711 on pdb-4v1m by gmfit










Pairwise fitting of target emdb-1711 on reference pdb-4v1m by gmfit(PID:2987653).





RANK[1] Corr.Coeff:0.682

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1711)

display:



color:



Pyrococcus furiosus RNA Polymerase [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1711)]







REFERENCE(pdb-4v1m)

display:



color:


b'ARCHITECTURE OF THE RNA POLYMERASE II-MEDIATOR CORE TRANSCRIPTION     ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.682
0.674
0.663
0.651
0.642
0.640
0.635
0.627
0.625
0.623







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4v1m"(PDB-format) or 
 "4v1m"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1711.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.551672,-0.200885,0.809508 150.643469 center 0,0,0 model #1
move 197.217904,188.744446,184.064359 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!