Pairwise fitting emdb-1711 on pdb-3jd1 by gmfit










Pairwise fitting of target emdb-1711 on reference pdb-3jd1 by gmfit(PID:3945289).





RANK[1] Corr.Coeff:0.712

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1711)

display:



color:



Pyrococcus furiosus RNA Polymerase [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1711)]







REFERENCE(pdb-3jd1)

display:



color:


b'GLUTAMATE DEHYDROGENASE IN COMPLEX WITH NADH, CLOSED CONFORMATION     ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.712
0.685
0.649
0.640
0.632
0.632
0.631
0.630
0.629
0.628







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3jd1"(PDB-format) or 
 "3jd1"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1711.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.726031,-0.038312,-0.686594 104.833085 center 0,0,0 model #1
move 88.508315,94.167461,86.302610 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!