Pairwise fitting emdb-1618 on pdb-3izy by gmfit










Pairwise fitting of target emdb-1618 on reference pdb-3izy by gmfit(PID:3280).





RANK[1] Corr.Coeff:0.391

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1618)

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3D reconstruction of heterodimeric yeast Pol alpha using electron microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1618)]







REFERENCE(pdb-3izy)

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b'MAMMALIAN MITOCHONDRIAL TRANSLATION INITIATION FACTOR 2               ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.391
0.380
0.367
0.346
0.339
0.291
0.271
0.262
0.158
0.142







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3izy"(PDB-format) or 
 "3izy"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1618.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.229696,0.890295,0.393210 154.791382 center 0,0,0 model #1
move -23.167600,-181.949349,-26.995836 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!