Pairwise fitting emdb-1618 on pdb-2yn9 by gmfit










Pairwise fitting of target emdb-1618 on reference pdb-2yn9 by gmfit(PID:4099485).





RANK[1] Corr.Coeff:0.457

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1618)

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3D reconstruction of heterodimeric yeast Pol alpha using electron microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1618)]







REFERENCE(pdb-2yn9)

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b'CRYO-EM STRUCTURE OF GASTRIC H+,K+-ATPASE WITH BOUND RUBIDIUM         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.457
0.453
0.399
0.384
0.377
0.370
0.348
0.326
0.219
0.203







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2yn9"(PDB-format) or 
 "2yn9"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1618.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.841502,0.534159,-0.080918 168.542985 center 0,0,0 model #1
move 51.306039,179.312253,99.043711 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!