Pairwise fitting emdb-1565 on pdb-5njt by gmfit



Pairwise fitting of target emdb-1565 on reference pdb-5njt by gmfit(PID:4104629).

RANK[1] Corr.Coeff:0.945 [JSmol] [Molmil]
TARGET(emdb-1565)
display:
color:
Recognition of Phe-tRNAPhe, Trp-tRNATrp and : a common molecular mechanism for aminoacyl-tRNA selection revealed by cryo-EM [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1565)]
REFERENCE(pdb-5njt)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.945 0.764 0.747 0.730 0.726 0.710 0.709 0.707 0.705 0.693

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5njt"(PDB-format) or "5njt"(mmCIF-format), and read it.
  2. Download the Target map "emd_1565.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.700888,0.713103,-0.015479 176.829632 center 0,0,0 model #1
    move 242.990353,244.345378,244.097898 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 5njt)] [Download the target GMM(emdb 1565)] [Download gmfit result file(4104629)]