Pairwise fitting emdb-1565 on pdb-5njt by gmfit










Pairwise fitting of target emdb-1565 on reference pdb-5njt by gmfit(PID:915930).





RANK[1] Corr.Coeff:0.945

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1565)

display:



color:



Recognition of Phe-tRNAPhe, Trp-tRNATrp and  : a common molecular mechanism for aminoacyl-tRNA selection revealed by cryo-EM [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1565)]







REFERENCE(pdb-5njt)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.945
0.764
0.747
0.730
0.726
0.710
0.709
0.707
0.705
0.693







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5njt"(PDB-format) or 
 "5njt"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1565.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.700888,0.713103,-0.015479 176.829632 center 0,0,0 model #1
move 242.990353,244.345378,244.097898 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5njt)]

[Download the target GMM(emdb 1565)]

[Download gmfit result file(915930)]