Pairwise fitting emdb-1565 on pdb-5mdz by gmfit










Pairwise fitting of target emdb-1565 on reference pdb-5mdz by gmfit(PID:472744).





RANK[1] Corr.Coeff:0.934

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1565)

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Recognition of Phe-tRNAPhe, Trp-tRNATrp and  : a common molecular mechanism for aminoacyl-tRNA selection revealed by cryo-EM [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1565)]







REFERENCE(pdb-5mdz)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.934
0.767
0.751
0.750
0.748
0.729
0.716
0.716
0.709
0.707







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5mdz"(PDB-format) or 
 "5mdz"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1565.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.461126,-0.672882,-0.578440 111.877136 center 0,0,0 model #1
move 213.726882,211.363112,211.290847 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!