Pairwise fitting emdb-1559 on pdb-5l08 by gmfit










Pairwise fitting of target emdb-1559 on reference pdb-5l08 by gmfit(PID:3204529).





RANK[1] Corr.Coeff:0.756

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1559)

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3D structure of human endoglin [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1559)]







REFERENCE(pdb-5l08)

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color:


b'CRYO-EM STRUCTURE OF CASP-8 TDED FILAMENT                             ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.756
0.750
0.734
0.717
0.713
0.708
0.706
0.705
0.679
0.679







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5l08"(PDB-format) or 
 "5l08"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1559.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.248830,0.931390,-0.265701 109.819706 center 0,0,0 model #1
move -571.660497,-162.844826,675.091256 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!