Pairwise fitting emdb-1559 on pdb-4cak by gmfit



Pairwise fitting of target emdb-1559 on reference pdb-4cak by gmfit(PID:1239925).

RANK[1] Corr.Coeff:0.660 [JSmol] [Molmil]
TARGET(emdb-1559)
display:
color:
3D structure of human endoglin [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1559)]
REFERENCE(pdb-4cak)
display:
color:
b'THREE-DIMENSIONAL RECONSTRUCTION OF INTACT HUMAN INTEGRIN ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.660 0.592 0.578 0.576 0.576 0.554 0.553 0.515 0.513 0.512

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4cak"(PDB-format) or "4cak"(mmCIF-format), and read it.
  2. Download the Target map "emd_1559.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.983575,-0.155176,0.092194 173.123724 center 0,0,0 model #1
    move -288.849135,499.865585,874.725525 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!