Pairwise fitting emdb-1559 on pdb-3m9i by gmfit



Pairwise fitting of target emdb-1559 on reference pdb-3m9i by gmfit(PID:29872).

RANK[1] Corr.Coeff:0.330 [JSmol] [Jmol_S] [Molmil]
TARGET(emdb-1559)
3D structure of human endoglin [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1559)]
REFERENCE(pdb-3m9i)
ELECTRON CRYSTALLOGRAPHIC STRUCTURE OF LENS AQUAPORIN-0 (AQP0) (LENS [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.330 0.323 0.318 0.268 0.246 0.228 0.221 0.160 0.148 0.148

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3m9i"(PDB-format) or "3m9i"(mmCIF-format), and read it.
  2. Download the Target map "emd_1559.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.037159,-0.702560,0.710654 134.661949 center 0,0,0 model #1
    move 928.292198,129.818191,95.880409 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!