Pairwise fitting emdb-1559 on pdb-2aki by gmfit










Pairwise fitting of target emdb-1559 on reference pdb-2aki by gmfit(PID:3954900).





RANK[1] Corr.Coeff:0.680

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1559)

display:



color:



3D structure of human endoglin [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1559)]







REFERENCE(pdb-2aki)

display:



color:


b'NORMAL MODE-BASED FLEXIBLE FITTED COORDINATES OF A TRANSLOCATING      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.680
0.672
0.644
0.643
0.639
0.636
0.629
0.625
0.621
0.618







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2aki"(PDB-format) or 
 "2aki"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1559.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.773699,-0.108690,0.624160 167.504896 center 0,0,0 model #1
move 515.108792,323.106943,759.525595 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!