Pairwise fitting emdb-1446 on pdb-6b43 by gmfit










Pairwise fitting of target emdb-1446 on reference pdb-6b43 by gmfit(PID:584044).





RANK[1] Corr.Coeff:0.093

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1446)

display:



color:



Cryo-electron tomography of Kaposi's sarcoma-associated herpesvirus capsids reveals dynamic scaffolding structures essential to capsid assembly and maturation. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1446)]







REFERENCE(pdb-6b43)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.093
0.067
0.065
0.062
0.060
0.060
0.058
0.058
0.056
0.056







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "6b43"(PDB-format) or 
 "6b43"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1446.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.383955,0.427318,0.818522 163.332332 center 0,0,0 model #1
move -57.185026,225.000907,498.344727 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!