Pairwise fitting emdb-1446 on pdb-5vku by gmfit










Pairwise fitting of target emdb-1446 on reference pdb-5vku by gmfit(PID:476626).





RANK[1] Corr.Coeff:0.107

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1446)

display:



color:



Cryo-electron tomography of Kaposi's sarcoma-associated herpesvirus capsids reveals dynamic scaffolding structures essential to capsid assembly and maturation. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1446)]







REFERENCE(pdb-5vku)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.107
0.076
0.072
0.070
0.068
0.066
0.065
0.065
0.064
0.064







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5vku"(PDB-format) or 
 "5vku"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1446.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.949091,0.092737,0.301042 160.671079 center 0,0,0 model #1
move -12.693725,396.886689,389.560863 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!