Pairwise fitting emdb-1446 on emdb-8703 by gmfit










Pairwise fitting of target emdb-1446 on reference emdb-8703 by gmfit(PID:4062389).





RANK[1] Corr.Coeff:0.698

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1446)

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Cryo-electron tomography of Kaposi's sarcoma-associated herpesvirus capsids reveals dynamic scaffolding structures essential to capsid assembly and maturation. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1446)]







REFERENCE(emdb-8703)

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A 3.9 Angstrom resolution density map of the human cytomegalovirus (HCMV) capsid and its securing layer of pp150 tegument protein [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.698
0.662
0.648
0.638
0.637
0.628
0.628
0.626
0.619
0.614







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_8703.map.gz", and read it.

  2.  Download the Target map "emd_1446.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.006845,-0.890136,-0.455644 176.226052 center 0,0,0 model #1
move -3.165465,5.756104,-7.237566 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 8703)]

[Download the target GMM(emdb 1446)]

[Download gmfit result file(4062389)]