Pairwise fitting emdb-1446 on emdb-8488 by gmfit










Pairwise fitting of target emdb-1446 on reference emdb-8488 by gmfit(PID:3573506).





RANK[1] Corr.Coeff:0.592

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1446)

display:



color:



Cryo-electron tomography of Kaposi's sarcoma-associated herpesvirus capsids reveals dynamic scaffolding structures essential to capsid assembly and maturation. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1446)]







REFERENCE(emdb-8488)

display:



color:


Bacteriophage PAU [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.592
0.551
0.546
0.531
0.530
0.522
0.520
0.517
0.516
0.511







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_8488.map.gz", and read it.

  2.  Download the Target map "emd_1446.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.807090,0.484581,-0.337322 137.057352 center 0,0,0 model #1
move 716.899536,718.916088,722.664993 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!