Pairwise fitting emdb-1446 on emdb-8487 by gmfit










Pairwise fitting of target emdb-1446 on reference emdb-8487 by gmfit(PID:4108550).





RANK[1] Corr.Coeff:0.521

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1446)

display:



color:



Cryo-electron tomography of Kaposi's sarcoma-associated herpesvirus capsids reveals dynamic scaffolding structures essential to capsid assembly and maturation. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1446)]







REFERENCE(emdb-8487)

display:



color:


Bacteriophage N3 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.521
0.516
0.515
0.514
0.512
0.511
0.510
0.509
0.505
0.504







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_8487.map.gz", and read it.

  2.  Download the Target map "emd_1446.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.767783,-0.382765,-0.513810 168.347900 center 0,0,0 model #1
move 683.238460,696.638519,677.501080 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 8487)]

[Download the target GMM(emdb 1446)]

[Download gmfit result file(4108550)]