Pairwise fitting emdb-1446 on emdb-6386 by gmfit










Pairwise fitting of target emdb-1446 on reference emdb-6386 by gmfit(PID:4161835).





RANK[1] Corr.Coeff:0.713

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1446)

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Cryo-electron tomography of Kaposi's sarcoma-associated herpesvirus capsids reveals dynamic scaffolding structures essential to capsid assembly and maturation. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1446)]







REFERENCE(emdb-6386)

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The capsid of Human Herpes Simplex Virus Type 1 imaged inside intact virions [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.713
0.699
0.693
0.692
0.689
0.688
0.686
0.685
0.679
0.678







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6386.map.gz", and read it.

  2.  Download the Target map "emd_1446.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.020080,-0.859888,-0.510088 176.549816 center 0,0,0 model #1
move 808.736217,812.542469,796.707357 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 6386)]

[Download the target GMM(emdb 1446)]

[Download gmfit result file(4161835)]