Pairwise fitting emdb-1446 on emdb-6386 by gmfit



Pairwise fitting of target emdb-1446 on reference emdb-6386 by gmfit(PID:4112454).

RANK[1] Corr.Coeff:0.713 [JSmol] [Molmil]
TARGET(emdb-1446)
display:
color:
Cryo-electron tomography of Kaposi's sarcoma-associated herpesvirus capsids reveals dynamic scaffolding structures essential to capsid assembly and maturation. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1446)]
REFERENCE(emdb-6386)
display:
color:
The capsid of Human Herpes Simplex Virus Type 1 imaged inside intact virions [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.713 0.699 0.693 0.692 0.689 0.688 0.686 0.685 0.679 0.678

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_6386.map.gz", and read it.
  2. Download the Target map "emd_1446.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.020080,-0.859888,-0.510088 176.549816 center 0,0,0 model #1
    move 808.736217,812.542469,796.707357 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 6386)] [Download the target GMM(emdb 1446)] [Download gmfit result file(4112454)]