Pairwise fitting emdb-1446 on emdb-5661 by gmfit










Pairwise fitting of target emdb-1446 on reference emdb-5661 by gmfit(PID:4126369).





RANK[1] Corr.Coeff:0.682

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1446)

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Cryo-electron tomography of Kaposi's sarcoma-associated herpesvirus capsids reveals dynamic scaffolding structures essential to capsid assembly and maturation. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1446)]







REFERENCE(emdb-5661)

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Cryo-electron microscopy of herpesvirus simplex type 1 A-capsid [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.682
0.676
0.674
0.666
0.665
0.663
0.657
0.656
0.656
0.651







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5661.map.gz", and read it.

  2.  Download the Target map "emd_1446.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.451477,0.708203,0.542786 179.125409 center 0,0,0 model #1
move 766.515865,773.533294,760.508258 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 5661)]

[Download the target GMM(emdb 1446)]

[Download gmfit result file(4126369)]