Pairwise fitting emdb-1446 on emdb-5661 by gmfit



Pairwise fitting of target emdb-1446 on reference emdb-5661 by gmfit(PID:4089127).

RANK[1] Corr.Coeff:0.682 [JSmol] [Molmil]
TARGET(emdb-1446)
display:
color:
Cryo-electron tomography of Kaposi's sarcoma-associated herpesvirus capsids reveals dynamic scaffolding structures essential to capsid assembly and maturation. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1446)]
REFERENCE(emdb-5661)
display:
color:
Cryo-electron microscopy of herpesvirus simplex type 1 A-capsid [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.682 0.676 0.674 0.666 0.665 0.663 0.657 0.656 0.656 0.651

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5661.map.gz", and read it.
  2. Download the Target map "emd_1446.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.451477,0.708203,0.542786 179.125409 center 0,0,0 model #1
    move 766.515865,773.533294,760.508258 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 5661)] [Download the target GMM(emdb 1446)] [Download gmfit result file(4089127)]