Pairwise fitting emdb-1446 on emdb-5255 by gmfit










Pairwise fitting of target emdb-1446 on reference emdb-5255 by gmfit(PID:454855).





RANK[1] Corr.Coeff:0.641

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1446)

display:



color:



Cryo-electron tomography of Kaposi's sarcoma-associated herpesvirus capsids reveals dynamic scaffolding structures essential to capsid assembly and maturation. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1446)]







REFERENCE(emdb-5255)

display:



color:


Seeing the Portal in Herpes Simplex Virus type I B-capsids. Map1: Icosahedral reconstruction of the HSV-1 B-capsid Map2: symmetry free (c1) reconstruction of the HSV-1 B-capsid Map3: c12 symmetrized portal density extracted from symmetry free (c1) reconstruction of the HSV-1 B-capsid Map4: c1 portal density extracted from symmetry free (c1) reconstruction of the HSV-1 B-capsid [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.641
0.629
0.628
0.625
0.625
0.620
0.612
0.608
0.608
0.603







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5255.map.gz", and read it.

  2.  Download the Target map "emd_1446.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.125563,-0.989337,-0.073798 175.420852 center 0,0,0 model #1
move 796.459994,789.161697,802.931547 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!