Pairwise fitting emdb-1430 on pdb-5o60 by gmfit










Pairwise fitting of target emdb-1430 on reference pdb-5o60 by gmfit(PID:1266918).





RANK[1] Corr.Coeff:0.878

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1430)

display:



color:



Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1430)]







REFERENCE(pdb-5o60)

display:



color:


b'STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM MYCOBACTERIUM       ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.878
0.739
0.720
0.719
0.712
0.702
0.696
0.681
0.679
0.676







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5o60"(PDB-format) or 
 "5o60"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1430.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.999119,0.019403,-0.037208 172.860274 center 0,0,0 model #1
move 166.923861,165.290929,160.014048 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!