Pairwise fitting emdb-1430 on pdb-5h4p by gmfit










Pairwise fitting of target emdb-1430 on reference pdb-5h4p by gmfit(PID:4087396).





RANK[1] Corr.Coeff:0.837

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1430)

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Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1430)]







REFERENCE(pdb-5h4p)

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color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.837
0.779
0.767
0.756
0.751
0.745
0.734
0.732
0.719
0.715







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5h4p"(PDB-format) or 
 "5h4p"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1430.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.009185,-0.993779,0.110987 14.002895 center 0,0,0 model #1
move 171.053886,187.075598,196.326337 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5h4p)]

[Download the target GMM(emdb 1430)]

[Download gmfit result file(4087396)]