Pairwise fitting emdb-1430 on pdb-5gak by gmfit



Pairwise fitting of target emdb-1430 on reference pdb-5gak by gmfit(PID:1518247).

RANK[1] Corr.Coeff:0.820 [JSmol] [Molmil]
TARGET(emdb-1430)
display:
color:
Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1430)]
REFERENCE(pdb-5gak)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.820 0.819 0.785 0.777 0.764 0.762 0.761 0.749 0.748 0.747

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5gak"(PDB-format) or "5gak"(mmCIF-format), and read it.
  2. Download the Target map "emd_1430.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.683628,0.729750,0.010834 161.042974 center 0,0,0 model #1
    move 194.477095,196.464598,206.030598 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!