Pairwise fitting emdb-1430 on pdb-5gad by gmfit










Pairwise fitting of target emdb-1430 on reference pdb-5gad by gmfit(PID:537311).





RANK[1] Corr.Coeff:0.774

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1430)

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Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1430)]







REFERENCE(pdb-5gad)

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b'RNC-SRP-SR COMPLEX EARLY STATE                                        ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.774
0.749
0.733
0.719
0.715
0.684
0.680
0.679
0.678
0.670







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5gad"(PDB-format) or 
 "5gad"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1430.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.983426,-0.066879,0.168524 145.145252 center 0,0,0 model #1
move 200.621284,222.896238,223.587112 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!