Pairwise fitting emdb-1430 on pdb-5ady by gmfit










Pairwise fitting of target emdb-1430 on reference pdb-5ady by gmfit(PID:4087822).





RANK[1] Corr.Coeff:0.906

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1430)

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Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1430)]







REFERENCE(pdb-5ady)

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color:


b'CRYO-EM STRUCTURES OF THE 50S RIBOSOME SUBUNIT BOUND WITH HFLX        ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.906
0.755
0.727
0.721
0.717
0.713
0.711
0.710
0.705
0.672







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5ady"(PDB-format) or 
 "5ady"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1430.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.760825,0.116319,-0.638448 68.467342 center 0,0,0 model #1
move -8.064715,30.093303,-13.329041 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!