Pairwise fitting emdb-1430 on pdb-3j3v by gmfit










Pairwise fitting of target emdb-1430 on reference pdb-3j3v by gmfit(PID:1244170).





RANK[1] Corr.Coeff:0.867

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1430)

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Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1430)]







REFERENCE(pdb-3j3v)

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b'ATOMIC MODEL OF THE IMMATURE 50S SUBUNIT FROM BACILLUS SUBTILIS (STATE' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.867
0.696
0.680
0.677
0.675
0.668
0.666
0.659
0.652
0.650







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j3v"(PDB-format) or 
 "3j3v"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1430.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.920603,-0.198761,-0.336132 150.232937 center 0,0,0 model #1
move -5.111980,-15.610599,-23.855959 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!