Pairwise fitting emdb-1402 on pdb-5mq7 by gmfit










Pairwise fitting of target emdb-1402 on reference pdb-5mq7 by gmfit(PID:4090355).





RANK[1] Corr.Coeff:0.347

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1402)

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color:



Cryo-electron microscopy of hepatitis B virions reveals variability in envelope capsid interactions. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1402)]







REFERENCE(pdb-5mq7)

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color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.347
0.311
0.308
0.307
0.306
0.305
0.303
0.300
0.298
0.296







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5mq7"(PDB-format) or 
 "5mq7"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1402.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.248833,-0.886391,-0.390377 111.783566 center 0,0,0 model #1
move 271.500043,295.373967,301.604151 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5mq7)]

[Download the target GMM(emdb 1402)]

[Download gmfit result file(4090355)]