Pairwise fitting emdb-1402 on pdb-3j1p by gmfit



Pairwise fitting of target emdb-1402 on reference pdb-3j1p by gmfit(PID:1093301).

RANK[1] Corr.Coeff:0.052 [JSmol] [Molmil]
TARGET(emdb-1402)
display:
color:
Cryo-electron microscopy of hepatitis B virions reveals variability in envelope capsid interactions. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1402)]
REFERENCE(pdb-3j1p)
display:
color:
b'ATOMIC MODEL OF RABBIT HEMORRHAGIC DISEASE VIRUS ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.052 0.052 0.052 0.052 0.052 0.052 0.051 0.051 0.051 0.051

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j1p"(PDB-format) or "3j1p"(mmCIF-format), and read it.
  2. Download the Target map "emd_1402.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.575761,-0.808100,0.124390 68.788942 center 0,0,0 model #1
    move -29.094077,0.042311,154.578728 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!