Pairwise fitting emdb-1390 on pdb-5y0b by gmfit










Pairwise fitting of target emdb-1390 on reference pdb-5y0b by gmfit(PID:2123811).





RANK[1] Corr.Coeff:0.567

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(pdb-5y0b)

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color:


b'PIG GASTRIC H+,K+ - ATPASE IN COMPLEX WITH BYK99                      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.567
0.544
0.539
0.531
0.422
0.247
0.234
0.232
0.219
0.210







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5y0b"(PDB-format) or 
 "5y0b"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.665192,0.547710,0.507477 127.819069 center 0,0,0 model #1
move 30.393293,37.862883,-43.698994 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!