Pairwise fitting emdb-1390 on pdb-4ux1 by gmfit










Pairwise fitting of target emdb-1390 on reference pdb-4ux1 by gmfit(PID:47396).





RANK[1] Corr.Coeff:0.570

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(pdb-4ux1)

display:



color:


b'CRYO-EM STRUCTURE OF ANTAGONIST-BOUND E2P GASTRIC H,K-ATPASE          ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.570
0.530
0.516
0.492
0.405
0.231
0.231
0.227
0.225
0.220







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4ux1"(PDB-format) or 
 "4ux1"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.722788,0.475118,0.501837 120.872443 center 0,0,0 model #1
move 28.592476,35.051052,-42.796269 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!