Pairwise fitting emdb-1390 on pdb-4c4q by gmfit



Pairwise fitting of target emdb-1390 on reference pdb-4c4q by gmfit(PID:1638256).

RANK[1] Corr.Coeff:0.504 [JSmol] [Molmil]
TARGET(emdb-1390)
display:
color:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1390)]
REFERENCE(pdb-4c4q)
display:
color:
b'CRYO-EM MAP OF THE CSFV IRES IN COMPLEX WITH THE SMALL RIBOSOMAL 40S ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.504 0.380 0.377 0.370 0.358 0.284 0.202 0.191 0.179 0.164

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4c4q"(PDB-format) or "4c4q"(mmCIF-format), and read it.
  2. Download the Target map "emd_1390.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.509350,0.540385,-0.669736 167.741198 center 0,0,0 model #1
    move 277.321254,178.047817,280.021989 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!