Pairwise fitting emdb-1390 on pdb-4a7n by gmfit










Pairwise fitting of target emdb-1390 on reference pdb-4a7n by gmfit(PID:3002186).





RANK[1] Corr.Coeff:0.565

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(pdb-4a7n)

display:



color:


b'STRUCTURE OF BARE F-ACTIN FILAMENTS OBTAINED FROM THE SAME SAMPLE AS  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.565
0.513
0.483
0.459
0.340
0.329
0.322
0.317
0.293
0.292







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4a7n"(PDB-format) or 
 "4a7n"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.224430,-0.426055,0.876418 147.658760 center 0,0,0 model #1
move 147.190620,146.666781,206.644352 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!