Pairwise fitting emdb-1390 on pdb-3izy by gmfit










Pairwise fitting of target emdb-1390 on reference pdb-3izy by gmfit(PID:2135946).





RANK[1] Corr.Coeff:0.552

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(pdb-3izy)

display:



color:


b'MAMMALIAN MITOCHONDRIAL TRANSLATION INITIATION FACTOR 2               ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.552
0.502
0.448
0.448
0.348
0.267
0.219
0.132
0.125
0.112







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3izy"(PDB-format) or 
 "3izy"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.884815,-0.341958,-0.316493 173.527716 center 0,0,0 model #1
move -23.851663,18.850972,-41.324816 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!