Pairwise fitting emdb-1390 on emdb-9554 by gmfit










Pairwise fitting of target emdb-1390 on reference emdb-9554 by gmfit(PID:4097807).





RANK[1] Corr.Coeff:0.487

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(emdb-9554)

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Single particle reconstruction of CNTNAP2: conformation #2 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.487
0.460
0.444
0.439
0.388
0.216
0.196
0.158
0.123
0.122







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_9554.map.gz", and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.382077,-0.526969,-0.759158 44.384330 center 0,0,0 model #1
move 54.082355,46.144404,55.399795 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!