Pairwise fitting emdb-1390 on emdb-9550 by gmfit










Pairwise fitting of target emdb-1390 on reference emdb-9550 by gmfit(PID:3959609).





RANK[1] Corr.Coeff:0.486

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(emdb-9550)

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Single particle reconstruction of CNTNAP2: conformation #6 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.486
0.445
0.415
0.338
0.296
0.201
0.197
0.164
0.155
0.142







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_9550.map.gz", and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.163670,0.962874,-0.214676 167.204823 center 0,0,0 model #1
move 50.020566,56.020674,54.360227 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!