Pairwise fitting emdb-1390 on emdb-5869 by gmfit










Pairwise fitting of target emdb-1390 on reference emdb-5869 by gmfit(PID:3604284).





RANK[1] Corr.Coeff:0.595

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(emdb-5869)

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Single-particle reconstruction of conformation IX of ligand-free sGC [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.595
0.592
0.515
0.504
0.393
0.271
0.205
0.188
0.187
0.185







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5869.map.gz", and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.982811,-0.026470,-0.182707 52.710940 center 0,0,0 model #1
move 24.876380,-19.517130,11.582941 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!